B0A48_15602 protein (Rachicladosporium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A48_15602

Uncharacterized protein. (439 aa)

Predicted Functional Partners:

B0A48_08196

0.648

B0A48_03123

0.637

B0A48_07342

0.479

B0A48_07009

0.477

B0A48_05775

0.477

B0A48_02612

0.477

B0A48_06250

0.471

B0A48_17955

0.465

B0A48_17254

0.465

B0A48_12160

0.461

Your Current Organism:

Rachicladosporium antarcticum

NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A48_02612	B0A48_06250	A0A1V8TPH1	A0A1V8TAJ2	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Amino_oxidase domain-containing protein.	0.890
B0A48_02612	B0A48_15602	A0A1V8TPH1	A0A1V8SGV8	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Uncharacterized protein.	0.477
B0A48_03123	B0A48_15602	A0A1V8TMJ8	A0A1V8SGV8	Beta-xylanase.	Uncharacterized protein.	0.637
B0A48_05775	B0A48_15602	A0A1V8TBY2	A0A1V8SGV8	Beta-xylanase.	Uncharacterized protein.	0.477
B0A48_06250	B0A48_02612	A0A1V8TAJ2	A0A1V8TPH1	Amino_oxidase domain-containing protein.	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.890
B0A48_06250	B0A48_07009	A0A1V8TAJ2	A0A1V8T811	Amino_oxidase domain-containing protein.	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.890
B0A48_06250	B0A48_15602	A0A1V8TAJ2	A0A1V8SGV8	Amino_oxidase domain-containing protein.	Uncharacterized protein.	0.471
B0A48_06250	B0A48_17254	A0A1V8TAJ2	A0A1V8SDP3	Amino_oxidase domain-containing protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.815
B0A48_06250	B0A48_17955	A0A1V8TAJ2	A0A1V8S9B6	Amino_oxidase domain-containing protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.815
B0A48_07009	B0A48_06250	A0A1V8T811	A0A1V8TAJ2	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Amino_oxidase domain-containing protein.	0.890
B0A48_07009	B0A48_15602	A0A1V8T811	A0A1V8SGV8	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Uncharacterized protein.	0.477
B0A48_07342	B0A48_15602	A0A1V8T8C3	A0A1V8SGV8	Beta-xylanase.	Uncharacterized protein.	0.479
B0A48_08196	B0A48_15602	A0A1V8T198	A0A1V8SGV8	Beta-xylanase.	Uncharacterized protein.	0.648
B0A48_12160	B0A48_15602	A0A1V8SUT1	A0A1V8SGV8	Uncharacterized protein.	Uncharacterized protein.	0.461
B0A48_15602	B0A48_02612	A0A1V8SGV8	A0A1V8TPH1	Uncharacterized protein.	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.477
B0A48_15602	B0A48_03123	A0A1V8SGV8	A0A1V8TMJ8	Uncharacterized protein.	Beta-xylanase.	0.637
B0A48_15602	B0A48_05775	A0A1V8SGV8	A0A1V8TBY2	Uncharacterized protein.	Beta-xylanase.	0.477
B0A48_15602	B0A48_06250	A0A1V8SGV8	A0A1V8TAJ2	Uncharacterized protein.	Amino_oxidase domain-containing protein.	0.471
B0A48_15602	B0A48_07009	A0A1V8SGV8	A0A1V8T811	Uncharacterized protein.	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.477
B0A48_15602	B0A48_07342	A0A1V8SGV8	A0A1V8T8C3	Uncharacterized protein.	Beta-xylanase.	0.479