STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A48_14913Uncharacterized protein. (505 aa)    
Predicted Functional Partners:
B0A48_00919
Uncharacterized protein.
   
 0.661
B0A48_00542
Uncharacterized protein.
   
 0.661
B0A48_07445
MADS-box domain-containing protein.
   
 
 0.618
B0A48_16989
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
  0.557
B0A48_13052
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
  0.557
B0A48_01026
Histone deacetylase RPD3.
    
  0.557
B0A48_01161
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
  0.557
B0A48_00353
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
  0.557
B0A48_00438
Histone deacetylase RPD3.
    
  0.557
B0A48_18424
Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.
    
  0.497
Your Current Organism:
Rachicladosporium antarcticum
NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.