STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A48_11158RRM domain-containing protein. (406 aa)    
Predicted Functional Partners:
B0A48_16646
Ribosome biogenesis protein RLP24.
   
 
 0.999
B0A48_04346
Uncharacterized protein.
   
 
 0.998
B0A48_00724
Uncharacterized protein.
   
 
 0.998
B0A48_16198
Uncharacterized protein.
   
 
 0.997
B0A48_15911
Uncharacterized protein.
   
 
 0.997
B0A48_15161
GN3L_Grn1 domain-containing protein.
   
 
 0.997
B0A48_02970
GN3L_Grn1 domain-containing protein.
   
 
 0.997
B0A48_10085
Brix domain-containing protein.
   
 
 0.996
B0A48_09708
Brix domain-containing protein.
   
 
 0.996
B0A48_17566
Uncharacterized protein.
   
 
 0.995
Your Current Organism:
Rachicladosporium antarcticum
NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.