B0A48_11503 protein (Rachicladosporium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A48_11503

NAD(P)-bd_dom domain-containing protein. (222 aa)

Predicted Functional Partners:

B0A48_04746

0.939

B0A48_06785

0.924

B0A48_07572

0.922

B0A48_08870

0.908

B0A48_18333

0.895

B0A48_10407

0.895

B0A48_12296

0.887

B0A48_03300

0.887

B0A48_16051

0.881

B0A48_13839

0.881

Your Current Organism:

Rachicladosporium antarcticum

NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A48_03300	B0A48_04746	A0A1V8TJL2	A0A1V8SML7	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
B0A48_03300	B0A48_06785	A0A1V8TJL2	A0A1V8SRC5	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial.	Uncharacterized protein; Belongs to the complex I LYR family.	0.999
B0A48_03300	B0A48_07572	A0A1V8TJL2	A0A1V8STD8	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial.	L51_S25_CI-B8 domain-containing protein.	0.999
B0A48_03300	B0A48_08870	A0A1V8TJL2	A0A1V8SYU1	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial.	NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial.	0.999
B0A48_03300	B0A48_10407	A0A1V8TJL2	A0A1V8SX90	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial.	NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial; Belongs to the complex I 30 kDa subunit family.	0.999
B0A48_03300	B0A48_11503	A0A1V8TJL2	A0A1V8SVP3	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial.	NAD(P)-bd_dom domain-containing protein.	0.887
B0A48_03300	B0A48_13839	A0A1V8TJL2	A0A1V8SN39	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial.	NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial; Belongs to the complex I 49 kDa subunit family.	0.999
B0A48_03300	B0A48_16051	A0A1V8TJL2	A0A1V8SFH6	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial.	NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial; Belongs to the complex I 49 kDa subunit family.	0.999
B0A48_03300	B0A48_18333	A0A1V8TJL2	A0A1V8S8K9	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial.	NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial; Belongs to the complex I 30 kDa subunit family.	0.999
B0A48_04746	B0A48_03300	A0A1V8SML7	A0A1V8TJL2	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial.	0.999
B0A48_04746	B0A48_06785	A0A1V8SML7	A0A1V8SRC5	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Uncharacterized protein; Belongs to the complex I LYR family.	0.999
B0A48_04746	B0A48_07572	A0A1V8SML7	A0A1V8STD8	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	L51_S25_CI-B8 domain-containing protein.	0.999
B0A48_04746	B0A48_08870	A0A1V8SML7	A0A1V8SYU1	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial.	0.995
B0A48_04746	B0A48_10407	A0A1V8SML7	A0A1V8SX90	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial; Belongs to the complex I 30 kDa subunit family.	0.999
B0A48_04746	B0A48_11503	A0A1V8SML7	A0A1V8SVP3	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	NAD(P)-bd_dom domain-containing protein.	0.939
B0A48_04746	B0A48_12296	A0A1V8SML7	A0A1V8SRN1	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial.	0.999
B0A48_04746	B0A48_13839	A0A1V8SML7	A0A1V8SN39	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial; Belongs to the complex I 49 kDa subunit family.	0.999
B0A48_04746	B0A48_16051	A0A1V8SML7	A0A1V8SFH6	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial; Belongs to the complex I 49 kDa subunit family.	0.999
B0A48_04746	B0A48_18333	A0A1V8SML7	A0A1V8S8K9	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial; Belongs to the complex I 30 kDa subunit family.	0.999
B0A48_06785	B0A48_03300	A0A1V8SRC5	A0A1V8TJL2	Uncharacterized protein; Belongs to the complex I LYR family.	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial.	0.999