B0A48_10152 protein (Rachicladosporium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A48_10152

Prephenate dehydratase domain-containing protein. (322 aa)

Predicted Functional Partners:

B0A48_16366

0.910

B0A48_04856

0.910

B0A48_08418

0.900

B0A48_04379

0.900

B0A48_06684

0.895

B0A48_03870

0.895

B0A48_08351

0.874

B0A48_04458

0.874

B0A48_04756

0.867

B0A48_17414

0.860

Your Current Organism:

Rachicladosporium antarcticum

NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A48_03870	B0A48_04379	A0A1V8TH69	A0A1V8TF71	Prephenate/arogenate dehydrogenase domain-containing protein.	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	0.933
B0A48_03870	B0A48_04458	A0A1V8TH69	A0A1V8TFT5	Prephenate/arogenate dehydrogenase domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.982
B0A48_03870	B0A48_04856	A0A1V8TH69	A0A1V8TDK5	Prephenate/arogenate dehydrogenase domain-containing protein.	Uncharacterized protein.	0.930
B0A48_03870	B0A48_08351	A0A1V8TH69	A0A1V8T5Q2	Prephenate/arogenate dehydrogenase domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.982
B0A48_03870	B0A48_08418	A0A1V8TH69	A0A1V8T5U1	Prephenate/arogenate dehydrogenase domain-containing protein.	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	0.933
B0A48_03870	B0A48_10152	A0A1V8TH69	A0A1V8SWY3	Prephenate/arogenate dehydrogenase domain-containing protein.	Prephenate dehydratase domain-containing protein.	0.895
B0A48_03870	B0A48_16366	A0A1V8TH69	A0A1V8SDR6	Prephenate/arogenate dehydrogenase domain-containing protein.	Uncharacterized protein.	0.930
B0A48_03870	B0A48_17414	A0A1V8TH69	A0A1V8SD51	Prephenate/arogenate dehydrogenase domain-containing protein.	Chorismate synthase.	0.978
B0A48_04379	B0A48_03870	A0A1V8TF71	A0A1V8TH69	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	Prephenate/arogenate dehydrogenase domain-containing protein.	0.933
B0A48_04379	B0A48_04458	A0A1V8TF71	A0A1V8TFT5	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	Aminotran_1_2 domain-containing protein.	0.831
B0A48_04379	B0A48_04856	A0A1V8TF71	A0A1V8TDK5	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	Uncharacterized protein.	0.941
B0A48_04379	B0A48_06684	A0A1V8TF71	A0A1V8T9M6	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	Prephenate/arogenate dehydrogenase domain-containing protein.	0.933
B0A48_04379	B0A48_08351	A0A1V8TF71	A0A1V8T5Q2	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	Aminotran_1_2 domain-containing protein.	0.831
B0A48_04379	B0A48_08418	A0A1V8TF71	A0A1V8T5U1	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	0.995
B0A48_04379	B0A48_10152	A0A1V8TF71	A0A1V8SWY3	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	Prephenate dehydratase domain-containing protein.	0.900
B0A48_04379	B0A48_16366	A0A1V8TF71	A0A1V8SDR6	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	Uncharacterized protein.	0.941
B0A48_04379	B0A48_17414	A0A1V8TF71	A0A1V8SD51	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	Chorismate synthase.	0.953
B0A48_04458	B0A48_03870	A0A1V8TFT5	A0A1V8TH69	Aminotran_1_2 domain-containing protein.	Prephenate/arogenate dehydrogenase domain-containing protein.	0.982
B0A48_04458	B0A48_04379	A0A1V8TFT5	A0A1V8TF71	Aminotran_1_2 domain-containing protein.	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	0.831
B0A48_04458	B0A48_04856	A0A1V8TFT5	A0A1V8TDK5	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.907