STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A48_09538GDP-mannose transporter 1. (383 aa)    
Predicted Functional Partners:
B0A48_01027
26S proteasome regulatory subunit rpn11.
    
 
 0.553
B0A48_00437
26S proteasome regulatory subunit rpn11.
    
 
 0.553
B0A48_01749
Uncharacterized protein.
   
  
 0.519
B0A48_18373
Calnexin.
   
 
 0.515
B0A48_18117
Calnexin.
   
 
 0.515
B0A48_10197
AMPKBI domain-containing protein.
      
 0.512
B0A48_14134
Actin, gamma.
      
 0.511
B0A48_13552
Uncharacterized protein.
   
  
 0.508
B0A48_11428
Uncharacterized protein.
   
  
 0.508
B0A48_10896
Uncharacterized protein.
   
  
 0.507
Your Current Organism:
Rachicladosporium antarcticum
NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.