B0A48_09202 protein (Rachicladosporium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A48_09202

Uncharacterized protein. (274 aa)

Predicted Functional Partners:

B0A48_10368

0.826

B0A48_09547

0.826

B0A48_13371

0.670

B0A48_12820

0.670

B0A48_10078

0.670

B0A48_09371

0.670

B0A48_08080

0.670

B0A48_03923

0.670

B0A48_02891

0.670

B0A48_16252

0.668

Your Current Organism:

Rachicladosporium antarcticum

NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A48_02891	B0A48_09202	A0A1V8TLK3	A0A1V8T1X3	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Uncharacterized protein.	0.670
B0A48_02891	B0A48_09547	A0A1V8TLK3	A0A1V8SZM9	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.991
B0A48_02891	B0A48_10368	A0A1V8TLK3	A0A1V8SX21	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.991
B0A48_02891	B0A48_16252	A0A1V8TLK3	A0A1V8SFL0	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	SE domain-containing protein.	0.970
B0A48_03923	B0A48_09202	A0A1V8TGY1	A0A1V8T1X3	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Uncharacterized protein.	0.670
B0A48_03923	B0A48_09547	A0A1V8TGY1	A0A1V8SZM9	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.996
B0A48_03923	B0A48_10368	A0A1V8TGY1	A0A1V8SX21	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.996
B0A48_03923	B0A48_16252	A0A1V8TGY1	A0A1V8SFL0	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	SE domain-containing protein.	0.986
B0A48_08080	B0A48_09202	A0A1V8T154	A0A1V8T1X3	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Uncharacterized protein.	0.670
B0A48_08080	B0A48_09547	A0A1V8T154	A0A1V8SZM9	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.991
B0A48_08080	B0A48_10368	A0A1V8T154	A0A1V8SX21	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.991
B0A48_08080	B0A48_16252	A0A1V8T154	A0A1V8SFL0	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	SE domain-containing protein.	0.970
B0A48_09202	B0A48_02891	A0A1V8T1X3	A0A1V8TLK3	Uncharacterized protein.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.670
B0A48_09202	B0A48_03923	A0A1V8T1X3	A0A1V8TGY1	Uncharacterized protein.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.670
B0A48_09202	B0A48_08080	A0A1V8T1X3	A0A1V8T154	Uncharacterized protein.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.670
B0A48_09202	B0A48_09371	A0A1V8T1X3	A0A1V8SZE1	Uncharacterized protein.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.670
B0A48_09202	B0A48_09547	A0A1V8T1X3	A0A1V8SZM9	Uncharacterized protein.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.826
B0A48_09202	B0A48_10078	A0A1V8T1X3	A0A1V8SW62	Uncharacterized protein.	Uncharacterized protein.	0.670
B0A48_09202	B0A48_10368	A0A1V8T1X3	A0A1V8SX21	Uncharacterized protein.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.826
B0A48_09202	B0A48_12820	A0A1V8T1X3	A0A1V8SQ31	Uncharacterized protein.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.670