STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A48_09815Flavodoxin-like domain-containing protein. (758 aa)    
Predicted Functional Partners:
B0A48_04942
tRNA wybutosine-synthesizing protein 2; S-adenosyl-L-methionine-dependent transferase that acts as a component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA. Catalyzes the transfer of the alpha-amino-alpha-carboxypropyl (acp) group from S- adenosyl-L-methionine to the C-7 position of 4-demethylwyosine (imG-14) to produce wybutosine-86.
  
 
 0.784
B0A48_16077
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
    
  0.779
B0A48_13993
SAM_MT_TRM5_TYW2 domain-containing protein.
  
 
 0.779
B0A48_13816
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
    
  0.779
B0A48_07755
TYW3 domain-containing protein.
  
  
 0.704
B0A48_11649
TYW3 domain-containing protein.
  
  
 0.702
B0A48_09727
JmjC domain-containing protein.
  
  
 0.607
B0A48_04991
JmjC domain-containing protein.
  
  
 0.607
B0A48_02774
Translation initiation factor RLI1.
   
  
 0.568
B0A48_16101
WD_REPEATS_REGION domain-containing protein.
   
 
 0.555
Your Current Organism:
Rachicladosporium antarcticum
NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014
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