STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A48_07217Uncharacterized protein. (272 aa)    
Predicted Functional Partners:
B0A48_09732
Uncharacterized protein; Belongs to the SKP1 family.
     
 0.782
B0A48_04987
Uncharacterized protein.
     
 0.782
B0A48_01027
26S proteasome regulatory subunit rpn11.
    
  0.617
B0A48_00437
26S proteasome regulatory subunit rpn11.
    
  0.617
B0A48_10134
26S protease regulatory subunit 4; Belongs to the AAA ATPase family.
   
 
  0.603
B0A48_09461
26S protease regulatory subunit 4; Belongs to the AAA ATPase family.
   
 
  0.603
B0A48_16997
PCI domain-containing protein.
   
 
  0.602
B0A48_13061
PCI domain-containing protein.
   
 
  0.602
B0A48_16356
26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
     
 0.560
B0A48_04866
26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
     
 0.560
Your Current Organism:
Rachicladosporium antarcticum
NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014
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