STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A48_06582CUE domain-containing protein. (1060 aa)    
Predicted Functional Partners:
B0A48_05683
Uncharacterized protein.
   
 0.652
B0A48_17021
WD_REPEATS_REGION domain-containing protein.
   
  0.610
B0A48_13083
WD_REPEATS_REGION domain-containing protein.
   
  0.610
B0A48_11664
Ipi1_N domain-containing protein.
    
  0.598
B0A48_07740
Ipi1_N domain-containing protein.
    
  0.598
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
  0.563
NOP7-2
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
  0.563
B0A48_03869
40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
   
  0.559
B0A48_15158
CLP1_P domain-containing protein.
    
  0.513
B0A48_03154
CLP1_P domain-containing protein.
    
  0.513
Your Current Organism:
Rachicladosporium antarcticum
NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014
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