B0A48_06279 protein (Rachicladosporium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A48_06279

MFS domain-containing protein. (563 aa)

Predicted Functional Partners:

B0A48_07972

0.526

B0A48_02720

0.526

B0A48_12006

0.521

B0A48_09238

0.521

B0A48_13001

0.520

B0A48_04062

0.520

B0A48_04930

0.517

B0A48_05683

0.476

B0A48_14623

0.447

B0A48_12319

0.447

Your Current Organism:

Rachicladosporium antarcticum

NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A48_02720	B0A48_05683	A0A1V8TLE5	A0A1V8TBL6	Lysophospholipase.	Uncharacterized protein.	0.775
B0A48_02720	B0A48_06279	A0A1V8TLE5	A0A1V8TAL7	Lysophospholipase.	MFS domain-containing protein.	0.526
B0A48_02720	B0A48_07972	A0A1V8TLE5	A0A1V8T0V2	Lysophospholipase.	Lysophospholipase.	0.790
B0A48_04062	B0A48_04930	A0A1V8THQ3	A0A1V8TE64	PHD-type domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.644
B0A48_04062	B0A48_06279	A0A1V8THQ3	A0A1V8TAL7	PHD-type domain-containing protein.	MFS domain-containing protein.	0.520
B0A48_04062	B0A48_12319	A0A1V8THQ3	A0A1V8SRR5	PHD-type domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.635
B0A48_04062	B0A48_14623	A0A1V8THQ3	A0A1V8SLA3	PHD-type domain-containing protein.	Uncharacterized protein.	0.632
B0A48_04930	B0A48_04062	A0A1V8TE64	A0A1V8THQ3	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	PHD-type domain-containing protein.	0.644
B0A48_04930	B0A48_06279	A0A1V8TE64	A0A1V8TAL7	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	MFS domain-containing protein.	0.517
B0A48_04930	B0A48_12319	A0A1V8TE64	A0A1V8SRR5	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
B0A48_04930	B0A48_13001	A0A1V8TE64	A0A1V8SQK4	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	PHD-type domain-containing protein.	0.644
B0A48_04930	B0A48_14623	A0A1V8TE64	A0A1V8SLA3	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.999
B0A48_05683	B0A48_02720	A0A1V8TBL6	A0A1V8TLE5	Uncharacterized protein.	Lysophospholipase.	0.775
B0A48_05683	B0A48_06279	A0A1V8TBL6	A0A1V8TAL7	Uncharacterized protein.	MFS domain-containing protein.	0.476
B0A48_05683	B0A48_07972	A0A1V8TBL6	A0A1V8T0V2	Uncharacterized protein.	Lysophospholipase.	0.775
B0A48_05683	B0A48_09238	A0A1V8TBL6	A0A1V8T2D4	Uncharacterized protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.591
B0A48_05683	B0A48_12006	A0A1V8TBL6	A0A1V8STU7	Uncharacterized protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.591
B0A48_06279	B0A48_02720	A0A1V8TAL7	A0A1V8TLE5	MFS domain-containing protein.	Lysophospholipase.	0.526
B0A48_06279	B0A48_04062	A0A1V8TAL7	A0A1V8THQ3	MFS domain-containing protein.	PHD-type domain-containing protein.	0.520
B0A48_06279	B0A48_04930	A0A1V8TAL7	A0A1V8TE64	MFS domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.517