STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A48_06516ATPase_AAA_core domain-containing protein. (492 aa)    
Predicted Functional Partners:
B0A48_16743
Nuclear protein localization protein 4.
   
 0.977
B0A48_14351
Nuclear protein localization protein 4.
   
 0.977
B0A48_00747
Uncharacterized protein.
   
 0.976
B0A48_00707
Uncharacterized protein.
   
 0.976
B0A48_10096
Uncharacterized protein.
    
 0.959
B0A48_09600
Uncharacterized protein.
    
 0.959
B0A48_01719
Polyubiquitin.
   
 0.957
B0A48_10361
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.953
B0A48_09541
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.953
B0A48_17577
Uncharacterized protein.
   
 0.952
Your Current Organism:
Rachicladosporium antarcticum
NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014
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