B0A48_06123 protein (Rachicladosporium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A48_06123

Uncharacterized protein. (390 aa)

Predicted Functional Partners:

B0A48_07071

0.952

B0A48_05830

0.952

B0A48_07072

0.929

B0A48_05829

0.929

B0A48_03919

0.869

B0A48_14686

0.789

B0A48_14271

0.789

B0A48_01274

0.786

B0A48_00098

0.786

B0A48_03489

0.782

Your Current Organism:

Rachicladosporium antarcticum

NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A48_00098	B0A48_03489	A0A1V8TTS2	A0A1V8TKL5	EamA domain-containing protein.	Uncharacterized protein.	0.692
B0A48_00098	B0A48_03919	A0A1V8TTS2	A0A1V8THA0	EamA domain-containing protein.	GTP-binding protein.	0.849
B0A48_00098	B0A48_05829	A0A1V8TTS2	A0A1V8TC21	EamA domain-containing protein.	Uncharacterized protein.	0.781
B0A48_00098	B0A48_05830	A0A1V8TTS2	A0A1V8TC44	EamA domain-containing protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.781
B0A48_00098	B0A48_06123	A0A1V8TTS2	A0A1V8TDB0	EamA domain-containing protein.	Uncharacterized protein.	0.786
B0A48_00098	B0A48_07071	A0A1V8TTS2	A0A1V8T7W4	EamA domain-containing protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.781
B0A48_00098	B0A48_07072	A0A1V8TTS2	A0A1V8T7K0	EamA domain-containing protein.	Uncharacterized protein.	0.781
B0A48_00098	B0A48_14271	A0A1V8TTS2	A0A1V8SM17	EamA domain-containing protein.	GTP-binding protein.	0.777
B0A48_00098	B0A48_14686	A0A1V8TTS2	A0A1V8SK52	EamA domain-containing protein.	GTP-binding protein.	0.777
B0A48_01274	B0A48_03489	A0A1V8TST0	A0A1V8TKL5	Putative Ras-related protein Rab7.	Uncharacterized protein.	0.698
B0A48_01274	B0A48_03919	A0A1V8TST0	A0A1V8THA0	Putative Ras-related protein Rab7.	GTP-binding protein.	0.851
B0A48_01274	B0A48_05829	A0A1V8TST0	A0A1V8TC21	Putative Ras-related protein Rab7.	Uncharacterized protein.	0.781
B0A48_01274	B0A48_05830	A0A1V8TST0	A0A1V8TC44	Putative Ras-related protein Rab7.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.781
B0A48_01274	B0A48_06123	A0A1V8TST0	A0A1V8TDB0	Putative Ras-related protein Rab7.	Uncharacterized protein.	0.786
B0A48_01274	B0A48_07071	A0A1V8TST0	A0A1V8T7W4	Putative Ras-related protein Rab7.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.781
B0A48_01274	B0A48_07072	A0A1V8TST0	A0A1V8T7K0	Putative Ras-related protein Rab7.	Uncharacterized protein.	0.781
B0A48_01274	B0A48_14271	A0A1V8TST0	A0A1V8SM17	Putative Ras-related protein Rab7.	GTP-binding protein.	0.781
B0A48_01274	B0A48_14686	A0A1V8TST0	A0A1V8SK52	Putative Ras-related protein Rab7.	GTP-binding protein.	0.781
B0A48_03489	B0A48_00098	A0A1V8TKL5	A0A1V8TTS2	Uncharacterized protein.	EamA domain-containing protein.	0.692
B0A48_03489	B0A48_01274	A0A1V8TKL5	A0A1V8TST0	Uncharacterized protein.	Putative Ras-related protein Rab7.	0.698