B0A48_04976 protein (Rachicladosporium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A48_04976

3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family. (339 aa)

Predicted Functional Partners:

B0A48_18379

0.969

B0A48_00232

0.959

B0A48_01041

0.877

B0A48_17144

0.861

B0A48_08627

0.861

B0A48_12470

0.828

B0A48_03605

0.828

B0A48_12230

0.820

B0A48_09308

0.820

B0A48_07872

0.818

Your Current Organism:

Rachicladosporium antarcticum

NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A48_00232	B0A48_03605	A0A1V8TU00	A0A1V8TKX3	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	Uncharacterized protein.	0.771
B0A48_00232	B0A48_04976	A0A1V8TU00	A0A1V8TE71	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.	0.959
B0A48_00232	B0A48_08627	A0A1V8TU00	A0A1V8T3Z1	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	Uncharacterized protein.	0.707
B0A48_00232	B0A48_09308	A0A1V8TU00	A0A1V8T2U7	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	Uncharacterized protein.	0.918
B0A48_00232	B0A48_12230	A0A1V8TU00	A0A1V8SUI8	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	Uncharacterized protein.	0.918
B0A48_00232	B0A48_12470	A0A1V8TU00	A0A1V8SS37	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	Uncharacterized protein.	0.771
B0A48_00232	B0A48_17144	A0A1V8TU00	A0A1V8SCQ9	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	Uncharacterized protein.	0.707
B0A48_00232	B0A48_18379	A0A1V8TU00	A0A1V8S932	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial.	0.849
B0A48_01041	B0A48_03605	A0A1V8TS27	A0A1V8TKX3	Uncharacterized protein.	Uncharacterized protein.	0.771
B0A48_01041	B0A48_04976	A0A1V8TS27	A0A1V8TE71	Uncharacterized protein.	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.	0.877
B0A48_01041	B0A48_08627	A0A1V8TS27	A0A1V8T3Z1	Uncharacterized protein.	Uncharacterized protein.	0.707
B0A48_01041	B0A48_09308	A0A1V8TS27	A0A1V8T2U7	Uncharacterized protein.	Uncharacterized protein.	0.918
B0A48_01041	B0A48_12230	A0A1V8TS27	A0A1V8SUI8	Uncharacterized protein.	Uncharacterized protein.	0.918
B0A48_01041	B0A48_12470	A0A1V8TS27	A0A1V8SS37	Uncharacterized protein.	Uncharacterized protein.	0.771
B0A48_01041	B0A48_17144	A0A1V8TS27	A0A1V8SCQ9	Uncharacterized protein.	Uncharacterized protein.	0.707
B0A48_01041	B0A48_18379	A0A1V8TS27	A0A1V8S932	Uncharacterized protein.	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial.	0.849
B0A48_03605	B0A48_00232	A0A1V8TKX3	A0A1V8TU00	Uncharacterized protein.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.771
B0A48_03605	B0A48_01041	A0A1V8TKX3	A0A1V8TS27	Uncharacterized protein.	Uncharacterized protein.	0.771
B0A48_03605	B0A48_04976	A0A1V8TKX3	A0A1V8TE71	Uncharacterized protein.	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.	0.828
B0A48_03605	B0A48_07872	A0A1V8TKX3	A0A1V8T0B3	Uncharacterized protein.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.847