B0A48_04290 protein (Rachicladosporium antarcticum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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a 3D structure is known or predicted

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Cooccurrence

Coexpression

Experiments

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[Homology]

Score

B0A48_04290

Uncharacterized protein. (434 aa)

Predicted Functional Partners:

B0A48_05683

0.916

B0A48_14264

0.721

B0A48_17965

0.718

B0A48_17245

0.718

B0A48_15613

0.718

B0A48_06016

0.718

B0A48_03999

0.684

B0A48_00631

0.684

B0A48_14912

0.682

B0A48_12178

0.682

Your Current Organism:

Rachicladosporium antarcticum

NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A48_00631	B0A48_04290	A0A1V8TV60	A0A1V8TEY7	Uncharacterized protein.	Uncharacterized protein.	0.684
B0A48_00631	B0A48_05683	A0A1V8TV60	A0A1V8TBL6	Uncharacterized protein.	Uncharacterized protein.	0.991
B0A48_00631	B0A48_14264	A0A1V8TV60	A0A1V8SM79	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.606
B0A48_03999	B0A48_04290	A0A1V8TH34	A0A1V8TEY7	Chitin-binding type-4 domain-containing protein.	Uncharacterized protein.	0.684
B0A48_03999	B0A48_05683	A0A1V8TH34	A0A1V8TBL6	Chitin-binding type-4 domain-containing protein.	Uncharacterized protein.	0.991
B0A48_03999	B0A48_14264	A0A1V8TH34	A0A1V8SM79	Chitin-binding type-4 domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.606
B0A48_04290	B0A48_00631	A0A1V8TEY7	A0A1V8TV60	Uncharacterized protein.	Uncharacterized protein.	0.684
B0A48_04290	B0A48_03999	A0A1V8TEY7	A0A1V8TH34	Uncharacterized protein.	Chitin-binding type-4 domain-containing protein.	0.684
B0A48_04290	B0A48_05683	A0A1V8TEY7	A0A1V8TBL6	Uncharacterized protein.	Uncharacterized protein.	0.916
B0A48_04290	B0A48_06016	A0A1V8TEY7	A0A1V8TCN3	Uncharacterized protein.	Uncharacterized protein.	0.718
B0A48_04290	B0A48_12178	A0A1V8TEY7	A0A1V8SUA3	Uncharacterized protein.	Uncharacterized protein.	0.682
B0A48_04290	B0A48_14264	A0A1V8TEY7	A0A1V8SM79	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.721
B0A48_04290	B0A48_14912	A0A1V8TEY7	A0A1V8SJK0	Uncharacterized protein.	MHYT domain-containing protein.	0.682
B0A48_04290	B0A48_15613	A0A1V8TEY7	A0A1V8SGT3	Uncharacterized protein.	Uncharacterized protein.	0.718
B0A48_04290	B0A48_17245	A0A1V8TEY7	A0A1V8SDA9	Uncharacterized protein.	Uncharacterized protein.	0.718
B0A48_04290	B0A48_17965	A0A1V8TEY7	A0A1V8S9C6	Uncharacterized protein.	Uncharacterized protein.	0.718
B0A48_05683	B0A48_00631	A0A1V8TBL6	A0A1V8TV60	Uncharacterized protein.	Uncharacterized protein.	0.991
B0A48_05683	B0A48_03999	A0A1V8TBL6	A0A1V8TH34	Uncharacterized protein.	Chitin-binding type-4 domain-containing protein.	0.991
B0A48_05683	B0A48_04290	A0A1V8TBL6	A0A1V8TEY7	Uncharacterized protein.	Uncharacterized protein.	0.916
B0A48_05683	B0A48_06016	A0A1V8TBL6	A0A1V8TCN3	Uncharacterized protein.	Uncharacterized protein.	0.406

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

49

average node degree:

8.91

avg. local clustering coefficient:

0.91

expected number of edges:

25

PPI enrichment p-value:

1.14e-05

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0070681

glutaminyl-tRNAGln biosynthesis via transamidation

2 of 2

2.76

0.97

0.0227

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0050567

glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity

3 of 4

2.64

2.31

0.00010

GO:0050566

asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity

2 of 2

2.76

1.38

0.0044

GO:0016874

Ligase activity

4 of 164

1.15

0.7

0.0207

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4387

Mostly uncharacterized, incl. LOG family, and BRCT domain

4 of 11

2.32

2.84

6.39e-06

CL:499

glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, and Amidase

3 of 5

2.54

2.26

0.00011

CL:4389

Mixed, incl. LOG family, and BRCT domain

2 of 5

2.36

1.18

0.0091

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00970

Aminoacyl-tRNA biosynthesis

3 of 41

1.63

1.1

0.0063

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0030956

glutamyl-tRNA(Gln) amidotransferase complex

2 of 3

2.59

1.2

0.0088

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0436

Ligase

4 of 72

1.51

1.33

0.0010

KW-0648

Protein biosynthesis

3 of 44

1.6

1.11

0.0056

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