STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A48_04487PseudoU_synth_1 domain-containing protein. (566 aa)    
Predicted Functional Partners:
B0A48_01254
TruB_N domain-containing protein.
   
 0.826
B0A48_00204
TruB_N domain-containing protein.
   
 0.826
B0A48_13354
Centromere/microtubule-binding protein cbf5.
   
 0.793
B0A48_09580
Uncharacterized protein.
   
 0.793
B0A48_11978
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.753
B0A48_09086
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.753
TRM82
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.703
TRM82-2
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.703
B0A48_18199
Uncharacterized protein.
  
   0.699
B0A48_11927
Uncharacterized protein.
  
   0.699
Your Current Organism:
Rachicladosporium antarcticum
NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014
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