B0A48_04628 protein (Rachicladosporium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Cooccurrence

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[Homology]

Score

B0A48_04628

Uncharacterized protein. (546 aa)

Predicted Functional Partners:

B0A48_17554

0.541

B0A48_17392

0.541

B0A48_16395

0.463

B0A48_14934

0.463

B0A48_13197

0.463

B0A48_12840

0.463

B0A48_11149

0.463

B0A48_10782

0.463

B0A48_08257

0.463

B0A48_05047

0.463

Your Current Organism:

Rachicladosporium antarcticum

NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A48_04628	B0A48_05047	A0A1V8TFW4	A0A1V8TE41	Uncharacterized protein.	GTP-binding protein.	0.463
B0A48_04628	B0A48_08257	A0A1V8TFW4	A0A1V8T5A3	Uncharacterized protein.	Uncharacterized protein.	0.463
B0A48_04628	B0A48_10782	A0A1V8TFW4	A0A1V8SZ50	Uncharacterized protein.	Uncharacterized protein.	0.463
B0A48_04628	B0A48_11149	A0A1V8TFW4	A0A1V8SUN2	Uncharacterized protein.	GTP-binding protein.	0.463
B0A48_04628	B0A48_12840	A0A1V8TFW4	A0A1V8SQ48	Uncharacterized protein.	GTP-binding protein.	0.463
B0A48_04628	B0A48_13197	A0A1V8TFW4	A0A1V8SNG3	Uncharacterized protein.	GTP-binding protein.	0.463
B0A48_04628	B0A48_14934	A0A1V8TFW4	A0A1V8SJ12	Uncharacterized protein.	GTP-binding protein.	0.463
B0A48_04628	B0A48_16395	A0A1V8TFW4	A0A1V8SES9	Uncharacterized protein.	GTP-binding protein.	0.463
B0A48_04628	B0A48_17392	A0A1V8TFW4	A0A1V8SCF3	Uncharacterized protein.	Uncharacterized protein.	0.541
B0A48_04628	B0A48_17554	A0A1V8TFW4	A0A1V8SAQ6	Uncharacterized protein.	Uncharacterized protein.	0.541
B0A48_05047	B0A48_04628	A0A1V8TE41	A0A1V8TFW4	GTP-binding protein.	Uncharacterized protein.	0.463
B0A48_05047	B0A48_08257	A0A1V8TE41	A0A1V8T5A3	GTP-binding protein.	Uncharacterized protein.	0.867
B0A48_05047	B0A48_11149	A0A1V8TE41	A0A1V8SUN2	GTP-binding protein.	GTP-binding protein.	0.783
B0A48_05047	B0A48_12840	A0A1V8TE41	A0A1V8SQ48	GTP-binding protein.	GTP-binding protein.	0.704
B0A48_05047	B0A48_13197	A0A1V8TE41	A0A1V8SNG3	GTP-binding protein.	GTP-binding protein.	0.850
B0A48_05047	B0A48_14934	A0A1V8TE41	A0A1V8SJ12	GTP-binding protein.	GTP-binding protein.	0.783
B0A48_05047	B0A48_17392	A0A1V8TE41	A0A1V8SCF3	GTP-binding protein.	Uncharacterized protein.	0.527
B0A48_05047	B0A48_17554	A0A1V8TE41	A0A1V8SAQ6	GTP-binding protein.	Uncharacterized protein.	0.527
B0A48_08257	B0A48_04628	A0A1V8T5A3	A0A1V8TFW4	Uncharacterized protein.	Uncharacterized protein.	0.463
B0A48_08257	B0A48_05047	A0A1V8T5A3	A0A1V8TE41	Uncharacterized protein.	GTP-binding protein.	0.867

page 1 of 5

Network Stats

number of nodes:

11

number of edges:

27

average node degree:

4.91

avg. local clustering coefficient:

0.943

expected number of edges:

12

PPI enrichment p-value:

0.000143

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 108

1.51

3.17

5.08e-14

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0019843

rRNA binding

11 of 44

1.9

5.69

3.25e-18

GO:0003735

Structural constituent of ribosome

11 of 57

1.79

4.94

2.08e-17

GO:0000049

tRNA binding

3 of 28

1.54

0.96

0.0086

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

11 of 61

1.76

4.81

1.34e-17

GO:0044391

Ribosomal subunit

5 of 18

1.95

3.17

6.42e-08

GO:0015934

Large ribosomal subunit

4 of 9

2.15

3.06

5.22e-07

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:129

rRNA-binding

9 of 11

2.42

7.84

9.15e-18

CL:126

Ribosome

10 of 23

2.14

6.86

4.97e-18

CL:123

Ribosome

11 of 40

1.94

5.98

1.46e-18

CL:131

Mixed, incl. Large ribosomal subunit, and K Homology domain, type 2

6 of 6

2.51

5.6

6.70e-12

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

apak03010

Ribosome

11 of 56

1.8

5.07

5.14e-18

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0044391

Ribosomal subunit

8 of 25

2.01

4.93

4.88e-13

GOCC:0005840

Ribosome

9 of 46

1.8

4.2

3.79e-13

GOCC:0015934

Large ribosomal subunit

5 of 10

2.2

3.84

9.67e-09

GOCC:0022626

Cytosolic ribosome

4 of 20

1.81

2.16

1.51e-05

GOCC:0015935

Small ribosomal subunit

3 of 15

1.81

1.62

0.00038

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0699

rRNA-binding

11 of 41

1.93

6.01

5.11e-19

KW-0689

Ribosomal protein

11 of 58

1.78

4.96

7.72e-18

KW-0820

tRNA-binding

3 of 18

1.73

1.37

0.0013

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