STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A48_03205Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)    
Predicted Functional Partners:
B0A48_01719
Polyubiquitin.
   
 0.997
B0A48_14064
J domain-containing protein; Belongs to the ubiquitin-activating E1 family.
   
 0.996
B0A48_04728
UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.
   
 0.996
B0A48_05421
HECT domain-containing protein.
   
 0.994
B0A48_01643
HECT domain-containing protein.
   
 0.994
B0A48_05683
Uncharacterized protein.
   
 0.989
B0A48_09706
E3 ubiquitin-protein ligase RBX1.
   
 0.988
B0A48_02726
Ubiquitin-conjugating enzyme variant MMS2.
   
0.974
B0A48_16195
RRN7-type domain-containing protein.
   
 0.958
B0A48_15916
RRN7-type domain-containing protein.
   
 0.958
Your Current Organism:
Rachicladosporium antarcticum
NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.