B0A48_03397 protein (Rachicladosporium antarcticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A48_03397

SPX domain-containing protein. (800 aa)

Predicted Functional Partners:

B0A48_15295

0.858

B0A48_14644

0.857

B0A48_14873

0.792

B0A48_12734

0.790

B0A48_06809

0.790

B0A48_13892

0.721

B0A48_04888

0.721

B0A48_14959

0.703

B0A48_11181

0.703

B0A48_15994

0.622

Your Current Organism:

Rachicladosporium antarcticum

NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A48_03397	B0A48_04888	A0A1V8TJW4	A0A1V8TDL1	SPX domain-containing protein.	Uncharacterized protein.	0.721
B0A48_03397	B0A48_06809	A0A1V8TJW4	A0A1V8T9D6	SPX domain-containing protein.	Repressible high-affinity phosphate permease.	0.790
B0A48_03397	B0A48_11181	A0A1V8TJW4	A0A1V8SV72	SPX domain-containing protein.	Vacuolar transporter chaperone 1.	0.703
B0A48_03397	B0A48_12734	A0A1V8TJW4	A0A1V8SR89	SPX domain-containing protein.	Repressible high-affinity phosphate permease.	0.790
B0A48_03397	B0A48_13892	A0A1V8TJW4	A0A1V8SLR3	SPX domain-containing protein.	Uncharacterized protein.	0.721
B0A48_03397	B0A48_14644	A0A1V8TJW4	A0A1V8SK32	SPX domain-containing protein.	SPX domain-containing protein.	0.857
B0A48_03397	B0A48_14873	A0A1V8TJW4	A0A1V8SIQ2	SPX domain-containing protein.	Uncharacterized protein.	0.792
B0A48_03397	B0A48_14959	A0A1V8TJW4	A0A1V8SIZ0	SPX domain-containing protein.	Vacuolar transporter chaperone 1.	0.703
B0A48_03397	B0A48_15295	A0A1V8TJW4	A0A1V8SHS3	SPX domain-containing protein.	SPX domain-containing protein.	0.858
B0A48_03397	B0A48_15994	A0A1V8TJW4	A0A1V8SG80	SPX domain-containing protein.	Protein kinase domain-containing protein.	0.622
B0A48_04888	B0A48_03397	A0A1V8TDL1	A0A1V8TJW4	Uncharacterized protein.	SPX domain-containing protein.	0.721
B0A48_04888	B0A48_06809	A0A1V8TDL1	A0A1V8T9D6	Uncharacterized protein.	Repressible high-affinity phosphate permease.	0.674
B0A48_04888	B0A48_11181	A0A1V8TDL1	A0A1V8SV72	Uncharacterized protein.	Vacuolar transporter chaperone 1.	0.545
B0A48_04888	B0A48_12734	A0A1V8TDL1	A0A1V8SR89	Uncharacterized protein.	Repressible high-affinity phosphate permease.	0.674
B0A48_04888	B0A48_13892	A0A1V8TDL1	A0A1V8SLR3	Uncharacterized protein.	Uncharacterized protein.	0.923
B0A48_04888	B0A48_14644	A0A1V8TDL1	A0A1V8SK32	Uncharacterized protein.	SPX domain-containing protein.	0.722
B0A48_04888	B0A48_14873	A0A1V8TDL1	A0A1V8SIQ2	Uncharacterized protein.	Uncharacterized protein.	0.940
B0A48_04888	B0A48_14959	A0A1V8TDL1	A0A1V8SIZ0	Uncharacterized protein.	Vacuolar transporter chaperone 1.	0.545
B0A48_04888	B0A48_15295	A0A1V8TDL1	A0A1V8SHS3	Uncharacterized protein.	SPX domain-containing protein.	0.722
B0A48_04888	B0A48_15994	A0A1V8TDL1	A0A1V8SG80	Uncharacterized protein.	Protein kinase domain-containing protein.	0.978