B0A48_02800 protein (Rachicladosporium antarcticum)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

B0A48_02800

TMF_TATA_bd domain-containing protein. (885 aa)

Predicted Functional Partners:

B0A48_17701

0.886

B0A48_14004

0.798

B0A48_04793

0.798

B0A48_16197

0.677

B0A48_15914

0.677

B0A48_08477

0.669

B0A48_04441

0.669

B0A48_08206

0.664

B0A48_03066

0.664

B0A48_00960

0.664

Your Current Organism:

Rachicladosporium antarcticum

NCBI taxonomy Id: 1507870
Other names: CCFEE 5527, R. antarcticum, Rachicladosporium antarcticum Onofri & Egidi, 2014

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A48_00960	B0A48_02800	A0A1V8TS02	A0A1V8TLB6	Uncharacterized protein.	TMF_TATA_bd domain-containing protein.	0.664
B0A48_00960	B0A48_03066	A0A1V8TS02	A0A1V8TM92	Uncharacterized protein.	Uncharacterized protein.	0.809
B0A48_00960	B0A48_04441	A0A1V8TS02	A0A1V8TFD5	Uncharacterized protein.	Uncharacterized protein.	0.823
B0A48_00960	B0A48_04793	A0A1V8TS02	A0A1V8TDE7	Uncharacterized protein.	Ras-related protein Rab-6B.	0.847
B0A48_00960	B0A48_08206	A0A1V8TS02	A0A1V8T1A8	Uncharacterized protein.	Uncharacterized protein.	0.809
B0A48_00960	B0A48_08477	A0A1V8TS02	A0A1V8T5S3	Uncharacterized protein.	Uncharacterized protein.	0.823
B0A48_00960	B0A48_14004	A0A1V8TS02	A0A1V8SM28	Uncharacterized protein.	Ras-related protein Rab-6B.	0.847
B0A48_00960	B0A48_15914	A0A1V8TS02	A0A1V8SFZ9	Uncharacterized protein.	Uncharacterized protein.	0.992
B0A48_00960	B0A48_16197	A0A1V8TS02	A0A1V8SFI0	Uncharacterized protein.	Uncharacterized protein.	0.992
B0A48_00960	B0A48_17701	A0A1V8TS02	A0A1V8SAG4	Uncharacterized protein.	Uncharacterized protein.	0.802
B0A48_02800	B0A48_00960	A0A1V8TLB6	A0A1V8TS02	TMF_TATA_bd domain-containing protein.	Uncharacterized protein.	0.664
B0A48_02800	B0A48_03066	A0A1V8TLB6	A0A1V8TM92	TMF_TATA_bd domain-containing protein.	Uncharacterized protein.	0.664
B0A48_02800	B0A48_04441	A0A1V8TLB6	A0A1V8TFD5	TMF_TATA_bd domain-containing protein.	Uncharacterized protein.	0.669
B0A48_02800	B0A48_04793	A0A1V8TLB6	A0A1V8TDE7	TMF_TATA_bd domain-containing protein.	Ras-related protein Rab-6B.	0.798
B0A48_02800	B0A48_08206	A0A1V8TLB6	A0A1V8T1A8	TMF_TATA_bd domain-containing protein.	Uncharacterized protein.	0.664
B0A48_02800	B0A48_08477	A0A1V8TLB6	A0A1V8T5S3	TMF_TATA_bd domain-containing protein.	Uncharacterized protein.	0.669
B0A48_02800	B0A48_14004	A0A1V8TLB6	A0A1V8SM28	TMF_TATA_bd domain-containing protein.	Ras-related protein Rab-6B.	0.798
B0A48_02800	B0A48_15914	A0A1V8TLB6	A0A1V8SFZ9	TMF_TATA_bd domain-containing protein.	Uncharacterized protein.	0.677
B0A48_02800	B0A48_16197	A0A1V8TLB6	A0A1V8SFI0	TMF_TATA_bd domain-containing protein.	Uncharacterized protein.	0.677
B0A48_02800	B0A48_17701	A0A1V8TLB6	A0A1V8SAG4	TMF_TATA_bd domain-containing protein.	Uncharacterized protein.	0.886

page 1 of 6

Network Stats

number of nodes:

11

number of edges:

45

average node degree:

8.18

avg. local clustering coefficient:

0.879

expected number of edges:

13

PPI enrichment p-value:

1.39e-12

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0052621

Diguanylate cyclase activity

8 of 12

2.69

8.26

3.94e-17

GO:0071111

Cyclic-guanylate-specific phosphodiesterase activity

3 of 5

2.65

2.5

2.33e-05

GO:0042578

Phosphoric ester hydrolase activity

4 of 58

1.71

1.68

0.00018

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016021

Integral component of membrane

8 of 1351

0.64

0.47

0.0047

GO:0016020

Membrane

11 of 2949

0.44

0.36

0.0023

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:8019

Diguanylate cyclase, and His Kinase A (phosphoacceptor) domain

11 of 21

2.59

11.15

8.91e-25

CL:8027

Putative diguanylate phosphodiesterase, and Histidine kinase-like ATPase domain

6 of 11

2.61

5.93

2.30e-12

CL:8028

Putative diguanylate phosphodiesterase

4 of 6

2.69

3.88

5.21e-08

CL:8039

Mixed, incl. Histidine kinase-like ATPase domain, and Cyclic-guanylate-specific phosphodiesterase activity

2 of 5

2.47

1.28

0.0045

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map02020

Two-component system

6 of 533

0.92

0.69

0.0041

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005886

Plasma membrane

8 of 834

0.85

0.73

0.00052

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00267

Diguanylate cyclase

9 of 16

2.62

9.37

4.58e-20

SM00052

Putative diguanylate phosphodiesterase

5 of 9

2.61

4.96

2.73e-10

SM00091

PAS domain

3 of 8

2.44

2.51

1.77e-05

SM00086

Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)

2 of 6

2.39

1.45

0.0020

SM00065

Domain present in phytochromes and cGMP-specific phosphodiesterases.

2 of 15

1.99

1.1

0.0079

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