STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH04498.1Predicted metal-binding protein. (124 aa)    
Predicted Functional Partners:
SHH04517.1
L-threonine O-3-phosphate decarboxylase.
 
     0.847
cobD
Adenosylcobinamide-phosphate synthase; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
       0.814
SHH04441.1
Hypothetical protein.
  
     0.736
SHH04421.1
Sirohydrochlorin cobaltochelatase.
  
     0.735
SHH04340.1
Cobalt-precorrin 5A hydrolase / precorrin-3B C17-methyltransferase.
 
     0.704
SHH04381.1
precorrin-6Y C5,15-methyltransferase (decarboxylating).
 
     0.670
SHH04560.1
Lytic murein transglycosylase.
       0.667
SHH04581.1
Hypothetical protein.
       0.613
SHH04642.1
Cobalamin biosynthesis protein CobW.
 
    0.609
SHH04478.1
Response regulator receiver domain-containing protein.
       0.519
Your Current Organism:
Cognatiyoonia sediminum
NCBI taxonomy Id: 1508389
Other names: C. sediminum, DSM 28715, JCM 30120, Loktanella sediminum, Loktanella sediminum Liang et al. 2015, Loktanella sp. S3B03, MCCC 1K00257, strain S3B03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.