STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH07140.1S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde. (276 aa)    
Predicted Functional Partners:
SHH06288.1
S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
 0.999
SHH02743.1
Zn-dependent alcohol dehydrogenase.
 0.987
SHH07133.1
Hypothetical protein; Belongs to the UPF0178 family.
       0.864
SHG82655.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
    
 0.858
SHH08414.1
Formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
  0.837
SHG80477.1
NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
    
  0.827
SHH07167.1
Hypothetical protein.
       0.792
SHH07105.1
Threonine/homoserine efflux transporter RhtA.
       0.773
SHH07084.1
Ornithine cyclodeaminase.
       0.752
SHH07049.1
Pimeloyl-ACP methyl ester carboxylesterase.
    
  0.745
Your Current Organism:
Cognatiyoonia sediminum
NCBI taxonomy Id: 1508389
Other names: C. sediminum, DSM 28715, JCM 30120, Loktanella sediminum, Loktanella sediminum Liang et al. 2015, Loktanella sp. S3B03, MCCC 1K00257, strain S3B03
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