STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JMA_07930Serine-type D-Ala-D-Ala carboxypeptidase. (285 aa)    
Predicted Functional Partners:
JMA_19510
Penicillin-binding protein.
  
  
 0.918
JMA_00200
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.913
JMA_20290
Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.913
JMA_24840
Peptidoglycan glycosyltransferase.
     
 0.905
JMA_07940
Hypothetical protein.
       0.476
JMA_07950
Hypothetical protein.
       0.476
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
   
 0.468
JMA_07960
Putative isoflavone reductase.
       0.449
deoD
Purine nucleoside phosphorylase.
  
    0.437
Your Current Organism:
Jeotgalibacillus malaysiensis
NCBI taxonomy Id: 1508404
Other names: DSM 28777, J. malaysiensis, Jeotgalibacillus malaysiensis Yaakop et al. 2015, Jeotgalibacillus sp. D5, KCTC 33550, strain D5
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