STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JMA_25460Hypothetical protein. (333 aa)    
Predicted Functional Partners:
JMA_21590
Zinc ABC transporter ATP-binding protein YcdI.
 
 
 0.996
JMA_21580
Metal ABC transporter permease.
 
 0.994
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.679
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.663
JMA_19060
Cobalamin biosynthesis protein.
  
  
 0.612
JMA_28770
cobW/P47K subfamily GTPase.
  
  
 0.612
JMA_28780
4-hydroxytetrahydrobiopterin dehydratase.
  
  
 0.612
JMA_25450
Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
       0.597
mntR
Peptidase U32; Central regulator of manganese homeostasis. Belongs to the DtxR/MntR family.
  
  
 0.541
JMA_25440
Hypothetical protein; Belongs to the Dps family.
     
 0.416
Your Current Organism:
Jeotgalibacillus malaysiensis
NCBI taxonomy Id: 1508404
Other names: DSM 28777, J. malaysiensis, Jeotgalibacillus malaysiensis Yaakop et al. 2015, Jeotgalibacillus sp. D5, KCTC 33550, strain D5
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