STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JMA_26270Fe-S cluster assembly protein SufB. (465 aa)    
Predicted Functional Partners:
JMA_26310
Iron ABC transporter ATP-binding protein.
 
 0.999
JMA_26290
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.998
JMA_26280
nifU-like protein.
 
  
 0.970
JMA_26300
Fe-S cluster assembly protein SufD.
 
  
0.950
JMA_13960
Hypothetical protein.
 
   
 0.777
JMA_26030
Hypothetical protein; Belongs to the HesB/IscA family.
  
 
 0.462
JMA_26630
Hypothetical protein.
  
 
 0.462
JMA_31600
Hypothetical protein.
  
 
 0.462
JMA_26320
Hypothetical protein.
       0.402
Your Current Organism:
Jeotgalibacillus malaysiensis
NCBI taxonomy Id: 1508404
Other names: DSM 28777, J. malaysiensis, Jeotgalibacillus malaysiensis Yaakop et al. 2015, Jeotgalibacillus sp. D5, KCTC 33550, strain D5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.