STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JMA_33930Pyridoxal phosphate-dependent aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (386 aa)    
Predicted Functional Partners:
JMA_33940
Acetyltransferase.
  
 0.966
JMA_33950
Sugar transferase.
  
 0.912
JMA_34020
Polysaccharide biosynthesis protein CapD.
  
 0.800
JMA_29430
Acetyltransferase.
     0.797
JMA_33910
Hypothetical protein.
 
  
 0.769
JMA_33900
Capsular polysaccharide biosynthesis protein.
 
  
 0.760
JMA_33890
Beta-1,4-galactosyltransferase.
  
  
 0.754
JMA_33960
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.742
JMA_29440
UDP-galactose phosphate transferase.
  
 0.722
JMA_33920
Hypothetical protein.
  
    0.713
Your Current Organism:
Jeotgalibacillus malaysiensis
NCBI taxonomy Id: 1508404
Other names: DSM 28777, J. malaysiensis, Jeotgalibacillus malaysiensis Yaakop et al. 2015, Jeotgalibacillus sp. D5, KCTC 33550, strain D5
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