STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001558155_01908Unannotated protein. (92 aa)    
Predicted Functional Partners:
GCA_001558155_02114
Unannotated protein.
  
    0.684
GCA_001558155_01910
Unannotated protein.
 
   
 0.615
GCA_001558155_02109
Unannotated protein.
 
   
 0.605
GCA_001558155_01907
Unannotated protein.
       0.515
GCA_001558155_02924
Unannotated protein.
  
     0.454
GCA_001558155_01909
Unannotated protein.
       0.450
GCA_001558155_02592
Unannotated protein.
       0.424
GCA_001558155_01904
Unannotated protein.
     
 0.416
GCA_001558155_01906
Unannotated protein.
       0.403
GCA_001558155_01905
Unannotated protein.
       0.402
Your Current Organism:
Pseudoruegeria sabulilitoris
NCBI taxonomy Id: 1510458
Other names: KCTC 42111, NBRC 110380, P. sabulilitoris, Pseudoruegeria sabulilitoris Park et al. 2014, Pseudoruegeria sp. GJMS-35, strain GJMS-35
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.