STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJZ00631.1RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)    
Predicted Functional Partners:
KJZ00387.1
Acriflavin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.982
KJZ01925.1
Multidrug transporter AcrB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.981
tolC
Trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.966
KJY97164.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.842
KJZ01390.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.835
KJY99912.1
Multidrug transporter AcrB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.819
KJZ02153.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.809
KJZ01369.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.804
KJZ02154.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.707
KJY96190.1
Acriflavin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.691
Your Current Organism:
Pseudoalteromonas ruthenica
NCBI taxonomy Id: 151081
Other names: CIP 106857, KMM 300, LMG 19699, LMG:19699, P. ruthenica, Pseudoalteromonas ruthenica Ivanova et al. 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.