STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJY98835.1Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1023 aa)    
Predicted Functional Partners:
KJY98362.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.937
KJY97143.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.881
KJY99242.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.871
KJY97182.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.865
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.826
KJY98293.1
Phosphatidylglycerophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.813
thiL
Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.813
KJZ02250.1
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.771
nusB
Transcription antiterminator NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.762
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin; Belongs to the DMRL synthase family.
       0.762
Your Current Organism:
Pseudoalteromonas ruthenica
NCBI taxonomy Id: 151081
Other names: CIP 106857, KMM 300, LMG 19699, LMG:19699, P. ruthenica, Pseudoalteromonas ruthenica Ivanova et al. 2002
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