STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJY98474.1LPS biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (773 aa)    
Predicted Functional Partners:
lptE
Lipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.
 
 
 
 0.983
surA
Peptidylprolyl isomerase; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.
 
  
 0.955
lptA
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.929
KJY98476.1
Ribosomal RNA small subunit methyltransferase A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.909
KJY98478.1
Diadenosine tetraphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.897
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).
 
    0.890
apaG
Heavy metal transporter; Protein associated with Co2+ and Mg2+ efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.874
bamA
Outer membrane protein assembly protein YaeT; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.831
lptF
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.799
KJY98377.1
With LptABCF is involved in the transport of lipopolysaccharides; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.778
Your Current Organism:
Pseudoalteromonas ruthenica
NCBI taxonomy Id: 151081
Other names: CIP 106857, KMM 300, LMG 19699, LMG:19699, P. ruthenica, Pseudoalteromonas ruthenica Ivanova et al. 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.