STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJY97083.1L-alanine-DL-glutamate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)    
Predicted Functional Partners:
KJY97082.1
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.953
KJY97084.1
ErfK/YbiS/YcfS/YnhG family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.922
KJY97088.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.862
KJY97085.1
Sodium:solute symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.857
KJY97086.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.849
murQ
N-acetylmuramic acid-6-phosphate etherase; Catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.805
KJY97091.1
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.636
KJY98646.1
MR-MLE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.550
KJY97089.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.525
KJY96281.1
Microcin C7 resistance protein MccF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.518
Your Current Organism:
Pseudoalteromonas ruthenica
NCBI taxonomy Id: 151081
Other names: CIP 106857, KMM 300, LMG 19699, LMG:19699, P. ruthenica, Pseudoalteromonas ruthenica Ivanova et al. 2002
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