STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ASQ42_08885Unannotated protein. (653 aa)    
Predicted Functional Partners:
ASQ42_08875
Unannotated protein.
 
    0.957
ASQ42_08900
Unannotated protein.
 
 
 0.952
ASQ42_08895
Unannotated protein.
    0.945
ASQ42_08890
Unannotated protein.
    0.929
ASQ42_08870
Unannotated protein.
 
     0.927
ribA
Unannotated protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
  
 
 0.898
ASQ42_08570
Unannotated protein.
    
 0.822
ASQ42_08865
Unannotated protein.
 
    0.811
ASQ42_08880
Unannotated protein.
       0.800
ASQ42_01605
Unannotated protein.
  
 
 0.794
Your Current Organism:
Parasaccharibacter apium
NCBI taxonomy Id: 1510841
Other names: ATCC SD-6836, Acetobacteraceae bacterium A29, Acetobacteraceae bacterium B8, Acetobacteraceae bacterium C6, P. apium, strain A29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.