STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galEUnannotated protein; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (328 aa)    
Predicted Functional Partners:
glf
Unannotated protein.
    
 0.942
ASQ42_02610
Unannotated protein; Converts alpha-aldose to the beta-anomer.
 
 
 0.940
galU
Unannotated protein.
  
 0.915
ASQ42_00115
Unannotated protein.
  
 
 0.891
ASQ42_02245
Unannotated protein.
    
 0.690
ASQ42_07380
Unannotated protein.
    
 0.690
ASQ42_03350
Unannotated protein.
  
 
 0.644
rfbB
Unannotated protein; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
0.633
rfbC
Unannotated protein; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
   
 0.588
rfbA
Unannotated protein; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
    
 0.588
Your Current Organism:
Parasaccharibacter apium
NCBI taxonomy Id: 1510841
Other names: ATCC SD-6836, Acetobacteraceae bacterium A29, Acetobacteraceae bacterium B8, Acetobacteraceae bacterium C6, P. apium, strain A29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.