STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ASQ42_03775Unannotated protein; Belongs to the inositol monophosphatase superfamily. (268 aa)    
Predicted Functional Partners:
ASQ42_05500
Unannotated protein.
  
  
 
0.885
ASQ42_08685
Unannotated protein; Belongs to the inositol monophosphatase superfamily.
  
  
 
0.877
cysC
Unannotated protein; Catalyzes the synthesis of activated sulfate.
    
  0.792
nusA
Unannotated protein; Participates in both transcription termination and antitermination.
   
   0.758
nusG
Unannotated protein; Participates in transcription elongation, termination and antitermination.
   
 
 0.755
rpoB
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.746
rpoC
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.746
rpoZ
Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.746
ASQ42_03780
Unannotated protein.
       0.615
ASQ42_03770
Unannotated protein.
       0.514
Your Current Organism:
Parasaccharibacter apium
NCBI taxonomy Id: 1510841
Other names: ATCC SD-6836, Acetobacteraceae bacterium A29, Acetobacteraceae bacterium B8, Acetobacteraceae bacterium C6, P. apium, strain A29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.