Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rsbVAnti sigma b factor antagonist RsbV; Belongs to the anti-sigma-factor antagonist family. (106 aa)    
Predicted Functional Partners:
rsbW
RsbW.
 
 
 0.999
sigB
RNA polymerase sigma-37 factor (sigma-B); Belongs to the sigma-70 factor family.
 
 
 0.982
CBH22037.1
Putative regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.944
CBH21170.1
Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.941
fliY
Flagellar motor switching and energizing phosphatase; Function of homologous gene experimentally demonstrated in an other organism; cell process.
  
   0.918
CBH20549.1
Putative Serine phosphatase precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.915
flgE
Flagellar hook protein; Function of homologous gene experimentally demonstrated in an other organism; structure.
   
    0.904
CBH22477.1
Protein of unknown function; No homology to any previously reported sequences.
   
    0.904
flgB
Flagellar basal-body rod protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.896
fliG
Flagellar motor switching and energizing component; Function of homologous gene experimentally demonstrated in an other organism; cell process.
  
   0.853
Your Current Organism:
Acetoanaerobium sticklandii
NCBI taxonomy Id: 1511
Other names: A. sticklandii, ATCC 12662, BCRC 14485, CCRC 14485, CCRC:14485, CCUG 9281, Clostridium sticklandii, DSM 519, NCIMB 10654, strain StadtmanHF
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