STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBH20279.1PAP2 family protein. (170 aa)    
Predicted Functional Partners:
rplF
50S ribosomal subunit protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.844
CBH22438.1
Putative V-type sodium ATP synthase subunit C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    
 
 0.813
CBH22435.1
Vacuolar H+-transporting two-sector ATPase, F subunit.
    
 
 0.748
CBH22437.1
Putative V-type sodium ATP synthase subunit I; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the V-ATPase 116 kDa subunit family.
    
 
 0.733
rpoZ
Omega subunit of RNA polymerase (modular protein); Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.711
CBH20280.1
Homologs of previously reported genes of unknown function.
     
 0.674
CBH20281.1
Metal dependent phosphohydrolase.
       0.658
CBH20941.1
Transposase (fragment).
    
 0.650
CBH20278.1
Protein of unknown function; No homology to any previously reported sequences.
       0.539
CBH20277.1
Protein of unknown function; No homology to any previously reported sequences.
       0.468
Your Current Organism:
Acetoanaerobium sticklandii
NCBI taxonomy Id: 1511
Other names: A. sticklandii, ATCC 12662, BCRC 14485, CCRC 14485, CCRC:14485, CCUG 9281, Clostridium sticklandii, DSM 519, NCIMB 10654, strain StadtmanHF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.