STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
CBH20317.1Putative Fimbrial protein precursor (Pilin) (Strain K122-4); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (129 aa)    
Predicted Functional Partners:
gspE
General secretory pathway component, cryptic; Function of strongly homologous gene; transporter.
 
 
 0.986
gspF
General secretory pathway component, cryptic; Function of strongly homologous gene; transporter.
 
  
 0.976
CBH20981.1
Putative Type II secretion system protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.933
CBH20350.1
Putative Type IV fimbrial biogenesis protein, prepilin cysteine protease (C20) PilD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.904
yggR
Transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
 0.861
CBH20321.1
Putative Type IV pilus assembly protein PilM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.788
pilT
Twitching mobility protein.
 
  
 0.657
CBH21481.1
Putative competence protein precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.592
CBH20322.1
Protein of unknown function; No homology to any previously reported sequences.
  
  
 0.546
CBH21619.1
DNA processing protein (smf family) (modular protein).
  
  
 0.541
Your Current Organism:
Acetoanaerobium sticklandii
NCBI taxonomy Id: 1511
Other names: A. sticklandii, ATCC 12662, BCRC 14485, CCRC 14485, CCRC:14485, CCUG 9281, Clostridium sticklandii, DSM 519, NCIMB 10654, strain StadtmanHF
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