STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBH20330.1PAS modulated sigma54 specific transcriptional regulator, Fis family. (513 aa)    
Predicted Functional Partners:
kdd
3,5-diaminohexanoate dehydrogenase; Involved in the anaerobic fermentation of lysine. Catalyzes the oxidative deamination of L-erythro-3,5-diaminohexanoate (3,5-DAH) to 3-keto-5-aminohexanoate (KAH); Belongs to the KDD family.
 
 
    0.894
sigL
SigL.
 
   
 0.782
CBH22176.1
Putative PAS/PAC sensor protein (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
      0.583
CBH20329.1
Protein of unknown function; No homology to any previously reported sequences.
       0.488
CBH20328.1
Homologs of previously reported genes of unknown function.
       0.435
CBH20331.1
Putative NADPH-dependent FMN reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.432
CBH20327.1
Homologs of previously reported genes of unknown function.
  
    0.405
Your Current Organism:
Acetoanaerobium sticklandii
NCBI taxonomy Id: 1511
Other names: A. sticklandii, ATCC 12662, BCRC 14485, CCRC 14485, CCRC:14485, CCUG 9281, Clostridium sticklandii, DSM 519, NCIMB 10654, strain StadtmanHF
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