STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBH20509.1Sugar ABC transporter, permease protein (fragment); Belongs to the binding-protein-dependent transport system permease family. (137 aa)    
Predicted Functional Partners:
CBH20508.1
Inner-membrane translocator (fragment); Belongs to the binding-protein-dependent transport system permease family.
     0.994
CBH20506.1
Sugar ABC transporter, ATP-binding protein.
  
 0.969
CBH20505.1
Homologs of previously reported genes of unknown function.
 
  
 0.929
yufP
YufP; Belongs to the binding-protein-dependent transport system permease family.
 
  
0.921
CBH21238.1
YufO (fragment).
 
  
 0.881
CBH21239.1
Nucleoside transport ATP-binding protein (fragment).
 
  
 0.880
CBH21237.1
Lipoprotein, Bmp family.
 
  
 0.847
CBH20510.1
Putative FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.773
CBH20511.1
Purine or other phosphorylase family 1.
       0.748
CBH21240.1
ABC transporter, permease; Belongs to the binding-protein-dependent transport system permease family.
 
  
0.672
Your Current Organism:
Acetoanaerobium sticklandii
NCBI taxonomy Id: 1511
Other names: A. sticklandii, ATCC 12662, BCRC 14485, CCRC 14485, CCRC:14485, CCUG 9281, Clostridium sticklandii, DSM 519, NCIMB 10654, strain StadtmanHF
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