STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBH20580.1Exported protein of unknown function; No homology to any previously reported sequences. (407 aa)    
Predicted Functional Partners:
ksgA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.652
ftsI
Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.531
CBH20581.1
Putative Efflux transporter, RND family, MFP subunit precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.502
tcpG
Putative cell wall associated hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
0.498
CBH20595.1
Deoxyribonuclease, tatd family.
     
 0.476
metS
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
 0.469
CBH21577.1
Exported protein of unknown function; No homology to any previously reported sequences.
 
  
0.467
CBH21523.1
Exported protein of unknown function; No homology to any previously reported sequences.
 
  
0.454
CBH21654.1
Putative sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.452
pheT
Phenylalanine tRNA synthetase, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.424
Your Current Organism:
Acetoanaerobium sticklandii
NCBI taxonomy Id: 1511
Other names: A. sticklandii, ATCC 12662, BCRC 14485, CCRC 14485, CCRC:14485, CCUG 9281, Clostridium sticklandii, DSM 519, NCIMB 10654, strain StadtmanHF
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