STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBH20855.1Homologs of previously reported genes of unknown function. (309 aa)    
Predicted Functional Partners:
sigV
SigV; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.784
CBH20566.1
Protein of unknown function; No homology to any previously reported sequences.
  
 
 0.769
sigH
RNA polymerase factor sigma-70.
  
 
 0.769
CBH20857.1
Radical SAM domain protein.
 
     0.443
CBH20856.1
Protein of unknown function; No homology to any previously reported sequences.
       0.400
Your Current Organism:
Acetoanaerobium sticklandii
NCBI taxonomy Id: 1511
Other names: A. sticklandii, ATCC 12662, BCRC 14485, CCRC 14485, CCRC:14485, CCUG 9281, Clostridium sticklandii, DSM 519, NCIMB 10654, strain StadtmanHF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.