STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FNVArginine permease. (474 aa)    
Predicted Functional Partners:
CBH20869.1
Putative glutamine amidotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.781
amyA
Cytoplasmic alpha-amylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.579
CBH20304.1
Putative Alpha-amylase precursor (1, 4-alpha-D-glucan glucanohydrolase); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 0.579
CBH21094.1
Putative alpha-amylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 0.579
sbcD
Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
   0.416
yhdG
Amino acid/polyamine transporter I.
  
     0.415
purD
Phosphoribosylamine--glycine ligase (modular protein); Belongs to the GARS family.
  
  
 0.405
pheA
PheA.
   
 
 0.402
Your Current Organism:
Acetoanaerobium sticklandii
NCBI taxonomy Id: 1511
Other names: A. sticklandii, ATCC 12662, BCRC 14485, CCRC 14485, CCRC:14485, CCUG 9281, Clostridium sticklandii, DSM 519, NCIMB 10654, strain StadtmanHF
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