STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBH21385.1N-6 DNA methylase. (597 aa)    
Predicted Functional Partners:
CBH21384.1
Restriction modification system DNA specificity domain.
 
 0.998
CBH21382.1
Type III restriction protein res subunit.
 
  
 0.963
CBH22089.1
Restriction modification system DNA specificity domain.
  
 
 0.894
CBH21383.1
Protein of unknown function; No homology to any previously reported sequences.
       0.709
hsdR
Putative Type I site-specific deoxyribonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
  
 0.629
CBH21386.1
Protein of unknown function; No homology to any previously reported sequences.
       0.515
CBH21156.1
Homologs of previously reported genes of unknown function.
  
    0.473
CBH21157.1
Predicted type II restriction enzyme, methylase subunit.
  
    0.465
CBH21161.1
Homologs of previously reported genes of unknown function.
  
    0.460
guaA
GMP synthetase (glutamine aminotransferase); Catalyzes the synthesis of GMP from XMP.
     
 0.450
Your Current Organism:
Acetoanaerobium sticklandii
NCBI taxonomy Id: 1511
Other names: A. sticklandii, ATCC 12662, BCRC 14485, CCRC 14485, CCRC:14485, CCUG 9281, Clostridium sticklandii, DSM 519, NCIMB 10654, strain StadtmanHF
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