STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBH21497.1Radical SAM-superfamily protein. (613 aa)    
Predicted Functional Partners:
CBH21496.1
Homologs of previously reported genes of unknown function.
    0.995
CBH21495.1
Putative Ribonuclease g; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.791
CBH21493.1
Homologs of previously reported genes of unknown function.
  
    0.717
rpmA
50S ribosomal subunit protein L27; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the bacterial ribosomal protein bL27 family.
       0.566
rplU
50S ribosomal subunit protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
       0.566
kamD
D-lysine 5,6-aminomutase alpha subunit; Catalyzes the migration of the L-beta-lysine and D-lysine epsilon amino group to the delta carbon to produce 3,5-diaminohexanoate and 2,5-diaminohexanoate, respectively.
 
     0.508
kamE
D-lysine 5,6-aminomutase beta subunit; Catalyzes the migration of the L-beta-lysine and D-lysine epsilon amino group to the delta carbon to produce 3,5-diaminohexanoate and 2,5-diaminohexanoate, respectively.
  
  
 0.490
CBH21500.1
Putative MutS-like ATPases involved in mismatch repair, family 2.
       0.447
CBH21501.1
Homologs of previously reported genes of unknown function.
       0.442
kamA
L-lysine 2,3-aminomutase; Catalyzes the interconversion of L-alpha-lysine and L-beta- lysine.
       0.442
Your Current Organism:
Acetoanaerobium sticklandii
NCBI taxonomy Id: 1511
Other names: A. sticklandii, ATCC 12662, BCRC 14485, CCRC 14485, CCRC:14485, CCUG 9281, Clostridium sticklandii, DSM 519, NCIMB 10654, strain StadtmanHF
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