STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBH21732.1Transcriptional regulator, GntR family. (127 aa)    
Predicted Functional Partners:
CBH21731.1
Acetoin transport ATP-binding protein.
 
  
 0.947
CBH21730.1
Membrane protein of unknown function; No homology to any previously reported sequences.
 
  
 0.905
CBH21729.1
Exported protein of unknown function; No homology to any previously reported sequences.
       0.762
CBH22699.1
Homologs of previously reported genes of unknown function.
  
  
 0.578
CBH22698.1
Putative ABC transporter, ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.545
CBH21320.1
Putative transcriptional regulator (GntR family) YvoA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.531
CBH21733.1
Nucleoside recognition domain protein.
       0.483
CBH21734.1
Nucleoside recognition domain protein.
       0.483
CBH21735.1
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.474
udk
Uridine/cytidine kinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.467
Your Current Organism:
Acetoanaerobium sticklandii
NCBI taxonomy Id: 1511
Other names: A. sticklandii, ATCC 12662, BCRC 14485, CCRC 14485, CCRC:14485, CCUG 9281, Clostridium sticklandii, DSM 519, NCIMB 10654, strain StadtmanHF
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