STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBH22657.1Helix-turn-helix type 11 domain protein. (323 aa)    
Predicted Functional Partners:
CBH21759.1
RNA polymerase, alpha subunit domain protein.
    
   0.830
CBH22656.1
Homologs of previously reported genes of unknown function.
       0.773
CBH22654.1
Phenazine biosynthesis protein PhzF family.
       0.768
CBH22655.1
Homologs of previously reported genes of unknown function.
       0.768
CBH22658.1
Transcription activator effector binding.
 
     0.768
CBH20857.1
Radical SAM domain protein.
 
     0.523
CBH22650.1
Methyltransferase.
 
   
 0.481
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
   0.478
CBH22653.1
Putative MarR-family transcriptional regulator (Transcriptional regulator, MarR family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.467
rpoZ
Omega subunit of RNA polymerase (modular protein); Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.465
Your Current Organism:
Acetoanaerobium sticklandii
NCBI taxonomy Id: 1511
Other names: A. sticklandii, ATCC 12662, BCRC 14485, CCRC 14485, CCRC:14485, CCUG 9281, Clostridium sticklandii, DSM 519, NCIMB 10654, strain StadtmanHF
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