STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ecfTTransporter; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. (268 aa)    
Predicted Functional Partners:
ecfA
Cobalt transporter ATP-binding subunit; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 0.999
ecfA-2
Cobalt transporter ATP-binding subunit; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 0.999
KHO62056.1
Biotin biosynthesis protein BioY; PFAM: BioY family.
 
 0.981
KHO61199.1
Cobalt ABC transporter ATPase; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 0.970
KHO61373.1
PFAM: ABC transporter; TIGRFAM: cobalt transport protein ATP-binding subunit.
 0.970
truA
Pseudouridine synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.938
KHO61919.1
PFAM: Protein of unknown function (DUF3816).
 
 
 
 0.876
KHO62198.1
Putative membrane protein; PFAM: ECF-type riboflavin transporter, S component.
 
 
 0.857
rplQ
PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17.
     
 0.742
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
    0.730
Your Current Organism:
Thermoanaerobacter sp. YS13
NCBI taxonomy Id: 1511746
Other names: T. sp. YS13
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