STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHO61927.1PFAM: Shikimate / quinate 5-dehydrogenase. (362 aa)    
Predicted Functional Partners:
KHO61926.1
Quinate 5-dehydrogenase.
     0.996
KHO61939.1
PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     0.955
KHO61925.1
Transcriptional regulator.
 
     0.952
KHO61764.1
Molybdopterin-guanine dinucleotide biosynthesis protein A; PFAM: MobA-like NTP transferase domain.
 
     0.768
KHO62791.1
PFAM: Protein of unknown function (DUF1614).
  
     0.723
argD
PFAM: Aminotransferase class-III; TIGRFAM: transaminase, acetylornithine/succinylornithine family; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
     0.693
KHO62790.1
PFAM: Stage II sporulation protein P (SpoIIP); TIGRFAM: stage II sporulation protein P.
  
     0.624
KHO62828.1
PFAM: Rubrerythrin.
   
 
 0.601
KHO60956.1
Putative membrane protein; PFAM: VIT family; Rubrerythrin.
   
 
 0.601
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.563
Your Current Organism:
Thermoanaerobacter sp. YS13
NCBI taxonomy Id: 1511746
Other names: T. sp. YS13
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.