STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
E7GGH8_CLOSYUnannotated protein. (165 aa)    
Predicted Functional Partners:
E7GGH9_CLOSY
Unannotated protein.
 
     0.906
GCA_900049235_00036
Unannotated protein.
       0.707
E7GGI0_CLOSY
Unannotated protein.
       0.707
E7GGI1_CLOSY
Unannotated protein.
       0.707
E7GKF2_CLOSY
Unannotated protein.
    
 
 0.689
gyrB
Unannotated protein; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
    
 
 0.689
GCA_900049235_04477
Unannotated protein.
    
 0.593
E7GLH7_CLOSY
Unannotated protein.
     
 0.577
E7GGI3_CLOSY
Unannotated protein.
  
 
  0.520
E7GQH9_CLOSY
Unannotated protein.
   
 
 0.487
Your Current Organism:
Clostridium symbiosum
NCBI taxonomy Id: 1512
Other names: ATCC 14940, Bacteroides symbiosus, DSM 934, [. symbiosum, [Clostridium] symbiosum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.