STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF01273.1Trypsin. (268 aa)    
Predicted Functional Partners:
SME87892.1
Zinc carboxypeptidase.
  
 0.973
SMF05205.1
Zinc carboxypeptidase.
   
 0.928
SMF40960.1
Hypothetical protein.
    
 0.928
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 0.923
SMF55280.1
Tetratricopeptide repeat-containing protein.
   
 
 0.851
SMF71760.1
Pectinacetylesterase.
  
 0.839
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
    
 
 0.836
SMF03215.1
Hypothetical chaperone protein.
    
 
 0.836
SMF49343.1
Hsp70 protein.
    
 
 0.836
SMF49373.1
Hsp70 protein; Belongs to the heat shock protein 70 family.
    
 
 0.836
Your Current Organism:
Pseudobacteriovorax antillogorgiicola
NCBI taxonomy Id: 1513793
Other names: Bdellovibrionales bacterium RKEM611, LMG 28452, LMG:28452, NCCB 100521, P. antillogorgiicola, Pseudobacteriovorax antillogorgiicola McCauley et al. 2015, strain RKEM611
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.